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NCBI ON YOUTUBE: RAPT AND BLAST+ ON THE CLOUD, SARS-COV-2 GENOME DATA IN DATASETS

Redazione
(AGENPARL) – BETHESDA (MARYLAND-USA), sab 16 gennaio 2021 It’s time we do another roundup of what’s been happening on YouTube! First up, the NCBI YouTube channel has merged with the NLM YouTube channel. You’ll now be able to find diverse content all on one channel, from tips on using resources......
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COMMENT ON BLAST NOW OFFERS REFSEQ SELECT DATABASES FOR FASTER SEARCHES AND BETTER RESULTS BY NCBI INSIGHTS : PROKARYOTIC REPRESENTATIVE GENOMES UPDATED — NOW OVER 13 THOUSAND ASSEMBLIES!

Redazione
(AGENPARL) – BETHESDA (MARYLAND-USA), sab 16 gennaio 2021 RefSeq select offers a high-quality set of transcript and protein sequences for human and mouse; for prokaryotes,  RefSeq select is the set of proteins annotated on RefSeq reference and representative genomes. You can now search these sets on the nucleotide and protein......
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PROKARYOTIC REPRESENTATIVE GENOMES UPDATED — NOW OVER 13 THOUSAND ASSEMBLIES!

Redazione
(AGENPARL) – BETHESDA (MARYLAND-USA), mer 13 gennaio 2021 We have updated the bacterial and archaeal representative genome collection!  The current collection contains over 13,000 assemblies selected from the 203,000 prokaryotic RefSeq assemblies to represent their respective species. The collection has increased by 11% since August 2020.  We’ve included about 1,400......
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COMMENT ON RECENT ENHANCEMENTS TO BLAST+ (2.9.0): BUILT-IN TAXONOMY AND ACCESS TO PROTEINS FROM THE PATHOGEN DETECTION PROJECT BY NCBI INSIGHTS : PROTEIN BLASTDBS ARE ACCESSION-BASED

Redazione
(AGENPARL) – BETHESDA (MARYLAND-USA), sab 02 gennaio 2021 We have made some recent improvements to the BLAST+ applications that take full advantage of the version 5 BLAST databases (BLASTDBv5), which include built in taxonomic information for sequences and no longer rely on the integer sequence identifiers (gi numbers). With the......
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COMMENT ON NEW BLAST DEFAULT PARAMETERS AND SEARCH LIMITS COMING IN SEPTEMBER BY SERGEY POTAPOV

Redazione
(AGENPARL) – BETHESDA (MARYLAND-USA), sab 05 dicembre 2020 To provide a more efficient BLAST experience for everyone, we’re changing some parameters and limits on the web BLAST service on September 8, 2020. The new settings, listed below, will improve overall performance and make search times more consistent. The Expect Value......
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COMMENT ON DECEMBER 9 WEBINAR: USING BLAST+ IN DOCKER AND ON THE CLOUD BY ALAUL

Redazione
(AGENPARL) – BETHESDA (MARYLAND-USA), sab 05 dicembre 2020 Join us on December 9, 2020 to learn about containerized BLAST+ in Docker that is ready to use locally and in the cloud. We are staging BLAST databases in some cloud providers making running containerized BLAST as part of a pipeline in......
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DECEMBER 9 WEBINAR: USING BLAST+ IN DOCKER AND ON THE CLOUD

Redazione
(AGENPARL) – BETHESDA (MARYLAND-USA), mar 01 dicembre 2020 Join us on December 9, 2020 to learn about containerized BLAST+ in Docker that is ready to use locally and in the cloud. We are staging BLAST databases in some cloud providers making running containerized BLAST as part of a pipeline in......
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COMMENT ON RETIRING AND REPLACING THE BLINK PROTEIN SIMILARITY SERVICE BY S. HUNTER

Redazione
(AGENPARL) – BETHESDA (MARYLAND-USA), sab 28 novembre 2020 NCBI is discontinuing the BLink protein similarity service effective immediately. BLink provided graphical access to related proteins from protein records in the Entrez system. Because of the increasing volume of data in the protein database, BLink has become less useful as a......
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COMMENT ON NEW BLAST DEFAULT PARAMETERS AND SEARCH LIMITS COMING IN SEPTEMBER BY ZHENGYUSI

Redazione
(AGENPARL) – BETHESDA (MARYLAND-USA), mer 18 novembre 2020 To provide a more efficient BLAST experience for everyone, we’re changing some parameters and limits on the web BLAST service on September 8, 2020. The new settings, listed below, will improve overall performance and make search times more consistent. The Expect Value......
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COMMENT ON BLAST+ 2.11.0 NOW AVAILABLE WITH LIMITED USAGE REPORTING TO HELP IMPROVE BLAST BY MAKTBAHNET

Redazione
(AGENPARL) – BETHESDA (MARYLAND-USA), lun 16 novembre 2020 BLAST+ 2.11.0 release is now available from our FTP site.  The main advance is the to provide usage reports to NCBI to help us improve BLAST.  This information is limited to the name of the BLAST program, some basic database metadata, a......

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